Analysis Results

Support for viewing your (user-specific) analysis results is coming soon!

Explanation of User-Specific Analysis Results

  • This page contains results for all of your analyses submitted through the exRNA Atlas analysis tools.
  • Use each Click to View link to view the results associated with a given analysis.

List of Tools

Below, you can read more about the different analysis tools offered by the exRNA Atlas.

Dimensionality Reduction Plotting Tool
  • Visualize selected Atlas data via PCA and tSNE embedding.
  • Choose between three different plotting styles (ggplot2, plotly 2D, and plotly 3D).
  • Pick between four different RNA categories (miRNA, piRNA, tRNA, snRNA) for your visualization.
  • Color your plots by various metadata categories like dataset, anatomical location, condition, and biofluid name.
  • Use filters to add or remove different datasets and biofluids from a given plot (with dynamically adjusted counts for each option).
    • Note that these filters are purely visual and do not recompute the PCA or tSNE values.
  • Tool designed and implemented by James Diao and Joel Rozowsky at the Gerstein Lab, Yale University, New Haven, CT.
  • Integrated into the exRNA Atlas by William Thistlethwaite and Andrew R. Jackson at the Bioinformatics Research Lab, Baylor College of Medicine, Houston, TX.
Pathway Finder
  • Use Pathway Finder (hosted by WikiPathways) to find pathways containing miRNAs of interest (or protein targets of those miRNAs).
  • Currently, the top ten differentially expressed miRNAs (via DESeq2) are used for analysis.
  • Click a given pathway title to visualize its contents at the bottom of the page.
  • Then, select a given miRNA to highlight its associated target(s).
  • The pathway visualization is interactive - zoom in or out by using the + and - icons, and click a given gene product to learn more about it.
  • Tool designed and implemented by Kristina Hanspers, Anders Riutta, and Alexander Pico at the Gladstone Institutes, San Francisco, CA.
  • Integrated into the exRNA Atlas by William Thistlethwaite and Neethu Shah at the Bioinformatics Research Lab, Baylor College of Medicine, Houston, TX.