Analysis Results

Support for viewing your (user-specific) analysis results is coming soon!

Explanation of User-Specific Analysis Results

  • This page contains results for all of your analyses submitted through the exRNA Atlas analysis tools.
  • Use each Click to View link to view the results associated with a given analysis.

List of Tools

Below, you can read more about the different analysis tools offered by the exRNA Atlas.

DESeq2
  • View a table containing differentially expressed miRNAs for selected Atlas data.
  • Sort data by a variety of different metrics (adjusted p-value by default).
  • Select some subset of miRNAs and use the Pathway Finder tool to find pathways containing miRNAs of interest (or protein targets of those miRNAs).
  • Tool designed and implemented by Michael Love, Simon Anders, and Wolfgang Huber (PubMed).
  • Integrated into the exRNA Atlas by William Thistlethwaite and Neethu Shah at the Bioinformatics Research Lab, Baylor College of Medicine, Houston, TX.
Dimensionality Reduction Plotting Tool
  • Visualize selected Atlas data via PCA and tSNE embedding.
  • Choose between three different plotting styles (ggplot2, plotly 2D, and plotly 3D).
  • Pick between four different RNA categories (miRNA, piRNA, tRNA, snRNA) for your visualization.
  • Color your plots by various metadata categories like dataset, anatomical location, condition, and biofluid name.
  • Use filters to add or remove different datasets and biofluids from a given plot (with dynamically adjusted counts for each option).
    • Note that these filters are purely visual and do not recompute the PCA or tSNE values.
  • Tool designed and implemented by James Diao and Joel Rozowsky at the Gerstein Lab, Yale University, New Haven, CT.
  • Integrated into the exRNA Atlas by William Thistlethwaite and Andrew R. Jackson at the Bioinformatics Research Lab, Baylor College of Medicine, Houston, TX.