Analysis Results
Date Name of Analysis Samples Processed View Results
2017/03/18 Kendall Jensen - Alzheimer's vs. Parkinson's (EXR-KJENS1sPlvS2-AN) - AD vs. CONTROLS - CSF Only 119 Click to View
2017/05/11 Kendall Jensen - Biofluids from Healthy Controls (EXR-KJENS1RID1-AN) 428 Click to View
2017/03/18 All Human RNA-seq Data 1965 Click to View
2017/03/18 Tushar Patel - Healthy vs. Cancer (EXR-TPATE1OqELFf-AN) 192 Click to View
2017/03/18 Kendall Jensen - Alzheimer's vs. Parkinson's (EXR-KJENS1sPlvS2-AN) - Alzheimer's Only 114 Click to View
2017/03/18 Kendall Jensen - Alzheimer's vs. Parkinson's (EXR-KJENS1sPlvS2-AN) - Serum Only 164 Click to View
2017/03/18 David Wong - Gastric Cancer vs. Healthy (EXR-DWONG1qf3tcS-AN) 198 Click to View
2017/03/18 Jane Freedman - Framingham Heart Study (EXR-JFREE1eZDUKB-AN) 39 Click to View
2017/03/18 All Human RNA-seq Data Processed by miRVanaParis Kit 1366 Click to View
2017/05/11 Kendall Jensen - IVH Study (EXR-KJENS12WGutU-AN) 70 Click to View
2017/03/18 Kendall Jensen - Alzheimer's vs. Parkinson's (EXR-KJENS1sPlvS2-AN) - Parkinson's Only 107 Click to View
2017/03/18 Markus Bitzer - Chronic Kidney Disease Study (EXR-MBITZ12SHVlr-AN) 80 Click to View
2017/03/18 All Human RNA-seq Data (EXR-TPATE1OqELFf-AN Removed as Outlier) 1773 Click to View
2017/03/18 All Human RNA-seq Data Processed by miRNeasy Kit (One Sample Excluded) 471 Click to View
2017/03/18 Kendall Jensen - Alzheimer's vs. Parkinson's (EXR-KJENS1sPlvS2-AN) - Healthy Controls Only 124 Click to View
2017/03/18 Kendall Jensen - Alzheimer's vs. Parkinson's (EXR-KJENS1sPlvS2-AN) 345 Click to View
2017/03/18 Kendall Jensen - Alzheimer's vs. Parkinson's (EXR-KJENS1sPlvS2-AN) - CSF Only 181 Click to View
2017/03/18 Kendall Jensen - aSAH Study (EXR-KJENS1WBaSro-AN) 523 Click to View
2017/03/18 Louise Laurent - Placental Dysfunction Study (EXR-LLAUR1s0A1mX-AN) 48 Click to View

Explanation of Public Analysis Results

  • This page contains all public analysis results submitted through the exRNA Atlas analysis tools.
    • These results are available to everyone and cover much of the Atlas data.
    • They should be useful for an initial examination of what the Atlas has to offer.
  • Use each Click to View link to view the results associated with a given analysis.

List of Tools

Below, you can read more about the different analysis tools offered by the exRNA Atlas.

DESeq2
  • View a table containing differentially expressed miRNAs for selected Atlas data.
  • Sort data by a variety of different metrics (adjusted p-value by default).
  • Select some subset of miRNAs and use the Pathway Finder tool to find pathways containing miRNAs of interest (or protein targets of those miRNAs).
  • Tool designed and implemented by Michael Love, Simon Anders, and Wolfgang Huber (PubMed).
  • Integrated into the exRNA Atlas by William Thistlethwaite and Neethu Shah at the Bioinformatics Research Lab, Baylor College of Medicine, Houston, TX.
Dimensionality Reduction Plotting Tool
  • Visualize selected Atlas data via PCA and tSNE embedding.
  • Choose between three different plotting styles (ggplot2, plotly 2D, and plotly 3D).
  • Pick between four different RNA categories (miRNA, piRNA, tRNA, snRNA) for your visualization.
  • Color your plots by various metadata categories like dataset, anatomical location, condition, and biofluid name.
  • Use filters to add or remove different datasets and biofluids from a given plot (with dynamically adjusted counts for each option).
    • Note that these filters are purely visual and do not recompute the PCA or tSNE values.
  • Tool designed and implemented by James Diao and Joel Rozowsky at the Gerstein Lab, Yale University, New Haven, CT.
  • Integrated into the exRNA Atlas by William Thistlethwaite and Andrew R. Jackson at the Bioinformatics Research Lab, Baylor College of Medicine, Houston, TX.