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Variant: NM_000018.4(ACADVL):c.1056_1058delinsA (p.Met352fs)

CA1139665146

932849 (ClinVar)

Gene: ACADVL
Condition: very long chain acyl-CoA dehydrogenase deficiency
Inheritance Mode: Autosomal recessive inheritance
UUID: 8ce1a00a-3058-49c6-8566-76e9cf237b17
Approved on: 2022-07-12
Published on: 2022-07-12

HGVS expressions

NM_000018.4:c.1056_1058delinsA
NM_000018.4(ACADVL):c.1056_1058delinsA (p.Met352fs)
NC_000017.11:g.7222844_7222846delinsA
CM000679.2:g.7222844_7222846delinsA
NC_000017.10:g.7126163_7126165delinsA
CM000679.1:g.7126163_7126165delinsA
NC_000017.9:g.7066887_7066889delinsA
NG_007975.1:g.8011_8013delinsA
NG_008391.2:g.2205_2207delinsT
ENST00000356839.10:c.1056_1058delinsA
ENST00000322910.9:c.*1011_*1013delinsA
ENST00000350303.9:c.990_992delinsA
ENST00000356839.9:c.1056_1058delinsA
ENST00000543245.6:c.1125_1127delinsA
ENST00000578824.5:n.205_207delinsA
ENST00000582379.1:n.440_442delinsA
ENST00000583858.5:c.85_87delinsA
NM_000018.3:c.1056_1058delinsA
NM_001033859.2:c.990_992delinsA
NM_001270447.1:c.1125_1127delinsA
NM_001270448.1:c.828_830delinsA
NM_001033859.3:c.990_992delinsA
NM_001270447.2:c.1125_1127delinsA
NM_001270448.2:c.828_830delinsA
More

Likely Pathogenic

Met criteria codes 3
PM2_Supporting BP4 PVS1

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen ACADVL Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines Version 1

PDF
Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
ACADVL VCEP
The c.1056_1058delinsA, p.(Met352Ilefs*6) variant in ACADVL is a frameshift variant predicted to cause a premature stop codon in biologically-relevant-exon 10/20 leading to nonsense mediated decay in a gene in which loss-of-function is an established disease mechanism (PVS1; PMIDs 9973285, 11590124). This variant is absent from gnomAD v2.1.1 (PM2_Supporting). To our knowledge, this variant has not been reported in the literature in any individuals with VLCADD. To our knowledge, functional assays have not been reported for this variant. In summary, this variant meets the criteria to be classified as LIKELY PATHOGENIC for autosomal recessive very long chain acyl-CoA dehydrogenase (VLCAD) deficiency based on the ACMG/AMP criteria applied, as specified by the ClinGen ACADVL Variant Curation Expert Panel: PVS1, PM2_Supporting (ClinGen ACADVL VCEP specifications version#2.0; approved 07-08-22).
Met criteria codes
PM2_Supporting
PM2_Supporting is met. This variant is absent from gnomAD v2.1.1 (PM2_Supporting).
BP4
BP4 is met. No predicted abnormal splicing by MaxEntScan and NNSPLICE
PVS1
PVS1 is met. The c.1056_1058delinsA, p.(Met352Ilefs*6) variant in ACADVL is a frameshift variant predicted to cause a premature stop codon in biologically-relevant-exon 10/20 leading to nonsense mediated decay in a gene in which loss-of-function is an established disease mechanism (PVS1; PMIDs 9973285, 11590124).
Curation History
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