exRNA Profiling Datasets (0 of 0 Shown)

Datasets Help

Each card in the layout above contains information about a dataset in the exRNA Atlas.
To learn more about a given dataset, explore the following options within each card:
  • The Analysis ID in the lower left corner will open an RNA profile grid for that dataset.
    For RNA-seq profiles, this grid will contain different read counts from various stages of mapping in the exceRpt pipeline.
    For qPCR profiles, this grid will contain sample metadata.
  • The Samples badge on the right side will open a grid containing sample metadata for that dataset.
  • The button will bring up a pop-over window that contains various downloads associated with the dataset.
    • The button will download a PDF containing different diagnostic plots for the dataset.
    • The button will download a table of the different raw (not normalized) miRNA read counts for the dataset.
    • The button will download a text file containing the exogenous genomic taxonomy's cumulative read counts for the dataset.
    • The button will download a text file containing the exogenous ribosomal RNA taxonomy's cumulative read counts for the dataset.
    • The button will download an archive containing a large assortment of different summary files for this dataset.
  • The button will bring up a pop-over window that contains links to external references to the dataset.
    • Examples include dbGaP, GEO, BioProject, and ArrayExpress.
  • The button will bring up a pop-over window that contains links to PubMed articles associated with the dataset.
  • The button will open up an overview page for the dataset on BioGPS, a gene annotation portal that will allow you to visualize counts for different miRNA species present in the dataset.
Note that not all options will be available for each card.