Each cell in this grid indicates the total number of biosamples collected and profiled for exRNAs from a biofluid-condition combination.
Click the number in a given cell to view key metadata about the relevant biosamples:
  • The biosample metadata document can be viewed in the GenboreeKB UI by clicking the Biosample Accession ID in the last column.
  • Quality control metrics are displayed for each sample. You can learn more about the QC metrics by visiting the ERC Consortium QC Standards page.
  • You can either download result files from one sample at a time or in bulk. Use the icons in the Download Data column to download files associated with an individual sample. Use the "Download Samples" button at the top of the grid to download files in bulk. You can find more information about the available files below as well as on our Batch Download tutorial. You can also view the Understanding exceRpt RNA-seq Analysis Results tutorial to better understand the various result files and their contents.
  • You can download metadata files by using the icons in the Download Metadata column. You can download Biosample, Experiment, or Donor metadata documents. You can also download all three metadata documents at the same time. See more information below.
  • You can process selected samples through comparative and downstream analysis tools by clicking the "Analyze Selected Samples" button at the top of the grid. View the Comparative and Downstream Analysis tutorial for more information.

Legend of icons, listed in the order in which they appear in the grid columns: (Mouse over each icon in the grid for more information)

Download Data
Download Icon For RNA-seq profiles, download the processed core results archive associated with this biosample. This archive will contain read counts from all three stages of exceRpt (endogenous, exogenous miRNA and rRNA, and exogenous genomes). For qPCR profiles, download the qPCR targets file associated with this biosample. The file will contain different miRNA targets and associated Ct values for those targets.
Download Exo and Endo Download the full results (alignments) for the first two stages of exceRpt (endogenous alignment and exogenous miRNA and rRNA alignment).
Download FASTQ Download the FASTQ file (if the dataset is already available in a public domain archive like SRA or GEO).
Embargoed Data This data is under restricted access and is protected for some time period (embargo). The embargo on a given dataset ends 12 months after the data was submitted to the DCC. View the ERC Consortium Data Access Policy for more details.
Controlled Access Data This data is unavailable because the associated biosample has been deposited in a controlled access archive like dbGaP (or will be soon). Click the Links to External Databases icon under the External References column to view any available links to controlled access archive(s) that contain data for this biosample. You can then request access to this biosample through those external databases.

Download Metadata
Download Biosample Metadata Document Download the Biosample metadata document.
Download Experiment Metadata Document Download the Experiment metadata document.
Download Donor Metadata Document Download the Donor metadata document.
Download Icon Download all three metadata documents (Biosample, Experiment, and Donor) as a single file.

RNA Profile
Bar Chart Icon View a histogram of reads mapped to various libraries.

External References
Links to External Databases View links to external databases like SRA, dbGaP, GEO, etc. if the data is available in a public domain archive or controlled access archive. Otherwise, view the data access policy if the data is currently protected via embargo.
Links to PubMed References View links to PubMed references, if available.